Yuuki A. Komata (♂)，
Dr. course ３rd grade

Birthday	：	May ２６th，１９７４
Blood Type	：	A，Rh+
Birth Place	：	Yoichi, Hokkaido, JPN

The Last Update ： Mar. ５th，２００４．

INFORMATION	：	Going to move to Bio-Macromolar Chemistry III, Division of Biological Sciences, Graduate School of Science, Hokkaido University (Nishimura Laboratory).	Links are here↓ Nishimura Laboratory -----------------
AFFILIATION	：	Chaotic Systems Lab., Complex Systems Engineering, Graduate School of Engineering, Hokkaido University. 　→　Map (I'm in 'Information, Electronic, System Engineering BLDG'.)
FIELD	：	Bioinformatics(GIW2003)， Structural Biology， Protein Engineering， Computer Simulation	Links↓ -------------- ●JSBi ●PSSJ (Japanese) ●SICE
Recent Favorite People.	：	Meat Beat Manifesto， M. Wada @ CIST (how are you these days?)， AQUA PONGiUM， KRAFTWERK	Links↓ -------------------- ●MBM WEB ○M.Wada seems not to own HP ●AQUA PONGiUM 02 ●KRAFTWERK
Recent Favorite Things	：	West 4st (cafe & bar)

USEFUL SOFTWARES I USED
	：
		●	For Molecular Dynamics	→	AMBER 6.0 (needs license)
		●	For Visualizing Molecules	→	Rasmol ver.2.6-ucb(for win)，ver.2.7.2.1(for RH7.1)(Free)， ViewerLite 4.2(Free ver. is no longer available...)
		●	For Making Movies of Molecules	→	PyMOL ver.0.86(Win, RH7.1 & RH9)(Free)， VideoMach ver.2.7.2(win, Shareware)
		●	For Making Mutant Protein	→	Swiss PDB Viewer ver.3.7(sp5 for win and RH9，normally 3.7 for RH7.1，Free)
		●	For Calculating RMSD	→	Swiss PDB Viewer ver.3.7
		●	For Making Ramachandran plot	→	Swiss PDB Viewer ver.3.7，PROCHECK ver.3.5.4(RH7.1 & RH9, Free)，
		●	For Making Movie of Ramachandran plot	→	Gimp ver.1.2.5，(RH7.1 & RH9, Free)，

Links↓ --------------------- ●AMBER ●Rasmol ●ViewerLite ●Swiss PDB Viewer ●PyMOL ●VideoMach ●PROCHECK ●Gimp

Presentations (domestic)：
●	Yuuki A. Komata, Kosei Ishimura, Mitsuo Wada,	“The thermo-dependent macroscale motion of protein analyzed using molecular dynamics.”， The 3rd Annual Meeting of the Protein Science Society of Japan，Sapporo．Jun.，2003，pp100(poster presentation)．
●	Yuuki A. Komata, Kosei Ishimura, Mitsuo Wada,	“The Dynamics of DNA-binding Protein HU---in the view of computer simulation”， KES in Hokkaido，Sapporo．Dec.，2002．
●	Yuuki, A. Komata, Kosei Ishimura, Mitsuo Wada,	“The Temperature Dependency of DNA-binding Protein HU Function”， The Society of Instrument and Control Engineers, Symposium on Systems and Information (SICE SSI2002)，Yokohama．Nov.，2002，pp263 - 268．

Presentations (international)：
●	Yuuki A. Komata, Mitsuo Wada,	“Molecular Simulation Aiming at Life Simulation”， ISAGA 2003，Chiba，Aug.，2003，pp809 - 816
●	Yuuki A. Komata, Kosei Ishimura, Mitsuo Wada,	“MD Application to Protein and Visualizing the Function”， SICE annual conference 2003 in Fukui，Fukui，Aug.，2003，(CD-ROM)
●	Yuuki A. Komata, Kosei Ishimura, Mitsuo Wada,	“The difference of thermo-dependent protein dynamics revealed by long-time molecular dynamics simulation”，2nd Asian Joint Workshop for Protein Informatics，Osaka，Japan．Feb.，2003 (poster presentation)．
●	Komata, Y.,Wada, M.,	“How the DNA-binding Protein HU Holds DNA? --Application of Molecular Dynamics to HU-DNA complex”，DNA-8, Sapporo，Japan．June，2002，pp328 (poster presentation)．

Complex Systems Engineering, Graduate School of Engineering,
Hokkaido University,
N13-W8, Kita-ku, Sapporo 060-8628, Japan

TEL: +81-11-706-7224
FAX: +81-11-706-7391
mail:→　komata@complex.eng.hokudai.ac.jp

　 　　

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